A general expression for bimolecular association rates with orientational constraints

نویسندگان

  • Maximilian Schlosshauer
  • David Baker
چکیده

We present a general expression for the association rate for partially diffusion-controlled reactions between spherical molecules with an asymmetric reactive patch on each surface. Reaction can occur only if the two patches are in contact and properly aligned to within specified angular tolerances. This extends and generalizes previous approaches that considered only axially symmetric patches; the earlier solutions are shown to be limiting cases of our general expression. Previous numerical results on the rate of protein–protein association with high steric specificity are in very good agreement with the value computed from our analytic expression. Using the new expression, we investigate the influence of orientational constraints on the rate constant. We find that for angular constraints of ∼ 5–15, a typical range for example in the case of protein–protein interactions, the reaction rate is about 2 to 3 orders of magnitude higher than expected from a simple geometric model.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Experimental evidence of the relevance of orientational correlations in photoinduced bimolecular reactions in solution.

A major problem in the extraction of the reaction probability in bimolecular processes is the disentanglement from the influence of molecular diffusion. One of the strategies to overcome it makes use of reactive solvents in which the reactants do not need to diffuse to encounter each other. However, most of our quantitative understanding of chemical reactions in solution between free partners i...

متن کامل

Mechanism Discrimination for Bimolecular Reactions: Revisited with a Practical Hydrogenation Case Study

The governing mechanism of surface reactions is a fundamental concern in heterogeneous catalysis. The Langmuir–Hinshelwood (LH) mechanism is widely accepted to control the surface reactions in many catalytic systems. This contribution derives and compares several important surface rate equations to evaluate their quality of fitting to the experimental data collected for a vapor-phase hydrogenat...

متن کامل

P-144: Glucose-6-Phosphate Dehydrogenase Activity in Ovine Oocytes in Association with Developmental Characteristics and Expression of Bax Gene

Background: Recent studies have revealed that oocyte competence can be assessed through the presence of the glucose-6-phosphate dehydrogenase (G6PDH) enzyme, as indicated by brilliant cresyl blue (BCB), a dye that can be degraded by G6PDH. In the present study, we aimed to examine the validity of BCB test to select developmentally competent oocyte in ovine and its association with stage-specifi...

متن کامل

E-Cadherin in Relation with the Proliferating Cell Nuclear Antigen of the Bilharzia Associ-ated and Non-Associated Urinary Bladder Carcinoma

Background: E-cadherin is a trans-membrane glycoprotein that plays a critical role in many aspects of cell adhesion as well as establishment and maintenance of epithelial cell polarity. Loss of the adhesive function of E-cadherin seems to promote invasive and metastatic properties of neoplastic cells. Objectives: The present study is a retrospective study aiming to evaluate the loss of E-cadher...

متن کامل

The effect of macromolecular crowding on mobility of biomolecules, association kinetics, and gene expression in living cells

*Correspondence: Marcin Tabaka, Tomasz Kalwarczyk and Robert Holyst, Department of Soft Condensed Matter and Fluids, Institute of Physical Chemistry of the Polish Academy of Sciences, Kasprzaka 44/52, Warsaw 01-224, Poland e-mail: [email protected]; [email protected]; [email protected] We discuss a quantitative influence of macromolecular crowding on biological processes: motion, bimo...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2002